3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02696

Details:

PFam ID : PF02696

PFam Domain Description : Uncharacterized ACR, YdiU/UPF0061 family

Number of Sequence in 50% Dataset : 83

Number of Sequence in Full Dataset : 793

Average sequence length: 430.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02696	Q8RRD4_HELPY_1_151	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02696	B8P4D7_POSPM_189_428	100

Sequence based PCA Plot of the family - PF02696 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=94 Length=11
Motif2 Start=190 Length=8
Motif3 Start=4 Length=8
Motif4 Start=178 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay