3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02694

Details:

PFam ID : PF02694

PFam Domain Description : Uncharacterised BCR, YnfA/UPF0060 family

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 346

Average sequence length: 104.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02694	Q8RRD4_HELPY_1_151	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02694	Q39TK8_GEOMG_2_53	98.8

Sequence based PCA Plot of the family - PF02694 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=93 Length=8
Motif2 Start=56 Length=11
Motif3 Start=82 Length=8
Motif4 Start=15 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay