3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02690

Details:

PFam ID : PF02690

PFam Domain Description : Na+/Pi-cotransporter

Number of Sequence in 50% Dataset : 137

Number of Sequence in Full Dataset : 1519

Average sequence length: 132.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02690	E0TL60_MYCHH_153_335	86.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02690	E0TL60_MYCHH_153_335	100

Sequence based PCA Plot of the family - PF02690 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=17
Motif2 Start=44 Length=8
Motif3 Start=76 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay