3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02689

Details:

PFam ID : PF02689

PFam Domain Description : Helicase

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 248

Average sequence length: 193.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02689	B7TQ07_9BETA_10_927	43.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02689	D3XDS9_MUHV1_23_623	100

Sequence based PCA Plot of the family - PF02689 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=42 Length=8
Motif3 Start=129 Length=8
Motif4 Start=233 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay