3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02687

Details:

PFam ID : PF02687

PFam Domain Description : FtsX-like permease family

Number of Sequence in 50% Dataset : 2484

Number of Sequence in Full Dataset : 11753

Average sequence length: 121.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02687	C6A7I8_BIFLB_249_437	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02687	C6A7I8_BIFLB_249_437	99.8

Sequence based PCA Plot of the family - PF02687 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=45 Length=8
Motif2 Start=10 Length=8
Motif3 Start=26 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay