3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02686

Details:

PFam ID : PF02686

PFam Domain Description : Glu-tRNAGln amidotransferase C subunit

Number of Sequence in 50% Dataset : 130

Number of Sequence in Full Dataset : 1065

Average sequence length: 72.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02686	C1N128_MICPC_102_192	13.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02686	F2NX14_9SPIO_25_96	100

Sequence based PCA Plot of the family - PF02686 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=22 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay