3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02685

Details:

PFam ID : PF02685

PFam Domain Description : Glucokinase

Number of Sequence in 50% Dataset : 156

Number of Sequence in Full Dataset : 458

Average sequence length: 304.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02685	Q23RE9_TETTH_34_398	92.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02685	Q23RE9_TETTH_34_398	100

Sequence based PCA Plot of the family - PF02685 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=343 Length=8
Motif2 Start=201 Length=8
Motif3 Start=164 Length=8
Motif4 Start=1 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay