3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02684

Details:

PFam ID : PF02684

PFam Domain Description : Lipid-A-disaccharide synthetase

Number of Sequence in 50% Dataset : 150

Number of Sequence in Full Dataset : 797

Average sequence length: 354.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02684	A4BDA6_9GAMM_3_149	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02684	B9XR56_9BACT_6_399	100

Sequence based PCA Plot of the family - PF02684 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=13 Length=17
Motif2 Start=40 Length=8
Motif3 Start=83 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay