3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02683

Details:

PFam ID : PF02683

PFam Domain Description : Cytochrome C biogenesis protein transmembrane region

Number of Sequence in 50% Dataset : 257

Number of Sequence in Full Dataset : 1763

Average sequence length: 202.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02683	A4BDA6_9GAMM_3_149	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02683	C5B3P7_METEA_1_53	99.8

Sequence based PCA Plot of the family - PF02683 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=14
Motif2 Start=19 Length=8
Motif3 Start=1 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay