3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02682

Details:

PFam ID : PF02682

PFam Domain Description : Allophanate hydrolase subunit 1

Number of Sequence in 50% Dataset : 94

Number of Sequence in Full Dataset : 861

Average sequence length: 203.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02682	A4BDA6_9GAMM_3_149	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02682	E5U851_ALCXX_17_164	100

Sequence based PCA Plot of the family - PF02682 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=181 Length=8
Motif2 Start=7 Length=8
Motif3 Start=156 Length=8
Motif4 Start=205 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay