3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02680

Details:

PFam ID : PF02680

PFam Domain Description : Uncharacterized ArCR, COG1888

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 64

Average sequence length: 91.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02680	D4AQJ4_ARTBC_111_269	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02680	D7W0U8_9FLAO_1_94	100

Sequence based PCA Plot of the family - PF02680 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=53 Length=8
Motif2 Start=4 Length=21
Motif3 Start=71 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay