3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02679

Details:

PFam ID : PF02679

PFam Domain Description : 2R-phospho-3sulfolactate synthetase

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 117

Average sequence length: 236.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02679	D4AQJ4_ARTBC_111_269	56.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02679	Q01WZ1_SOLUE_9_254	100

Sequence based PCA Plot of the family - PF02679 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=258 Length=8
Motif2 Start=219 Length=8
Motif3 Start=9 Length=8
Motif4 Start=242 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay