3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02677

Details:

PFam ID : PF02677

PFam Domain Description : Uncharacterized BCR, COG1636

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 376

Average sequence length: 168.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02677	E8LN66_9GAMM_27_204	90

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02677	E8LN66_9GAMM_27_204	100

Sequence based PCA Plot of the family - PF02677 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=82 Length=8
Motif2 Start=29 Length=8
Motif3 Start=3 Length=8
Motif4 Start=164 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay