3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02676

Details:

PFam ID : PF02676

PFam Domain Description : Methyltransferase TYW3

Number of Sequence in 50% Dataset : 70

Number of Sequence in Full Dataset : 191

Average sequence length: 202.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02676	Q2U6S1_ASPOR_14_147	91.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02676	A4H5P7_LEIBR_38_321	100

Sequence based PCA Plot of the family - PF02676 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=288 Length=8
Motif3 Start=229 Length=8
Motif4 Start=204 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay