3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02673

Details:

PFam ID : PF02673

PFam Domain Description : Bacitracin resistance protein BacA

Number of Sequence in 50% Dataset : 156

Number of Sequence in Full Dataset : 1255

Average sequence length: 253.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02673	Q8KX25_SYNP2_134_204	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02673	D4L913_9FIRM_5_298	100

Sequence based PCA Plot of the family - PF02673 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=41 Length=8
Motif4 Start=53 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay