3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02672

Details:

PFam ID : PF02672

PFam Domain Description : CP12 domain

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 177

Average sequence length: 63.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02672	Q8KX25_SYNP2_134_204	16.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02672	B4WPZ2_9SYNE_25_94	100

Sequence based PCA Plot of the family - PF02672 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=26 Length=8
Motif3 Start=55 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay