3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02670

Details:

PFam ID : PF02670

PFam Domain Description : 1-deoxy-D-xylulose 5-phosphate reductoisomerase

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 1118

Average sequence length: 123.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02670	D7C1C7_STRBB_40_299	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02670	E5XB76_9ACTN_4_161	100

Sequence based PCA Plot of the family - PF02670 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=17 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay