3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02669

Details:

PFam ID : PF02669

PFam Domain Description : K+-transporting ATPase, c chain

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 534

Average sequence length: 178.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02669	D7C1C7_STRBB_40_299	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02669	A1RGC0_SHESW_1_71	100

Sequence based PCA Plot of the family - PF02669 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=18
Motif2 Start=27 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay