3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02668

Details:

PFam ID : PF02668

PFam Domain Description : Taurine catabolism dioxygenase TauD, TfdA family

Number of Sequence in 50% Dataset : 603

Number of Sequence in Full Dataset : 2311

Average sequence length: 245.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02668	D7C1C7_STRBB_40_299	97.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02668	E3SMI5_9CAUD_12_307	100

Sequence based PCA Plot of the family - PF02668 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=137 Length=8
Motif2 Start=315 Length=8
Motif3 Start=36 Length=8
Motif4 Start=300 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay