3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02665

Details:

PFam ID : PF02665

PFam Domain Description : Nitrate reductase gamma subunit

Number of Sequence in 50% Dataset : 88

Number of Sequence in Full Dataset : 437

Average sequence length: 199.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02665	C6PUB6_9CLOT_1_80	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02665	D9Y8W3_9BURK_2_228	100

Sequence based PCA Plot of the family - PF02665 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=218 Length=8
Motif2 Start=5 Length=8
Motif3 Start=198 Length=8
Motif4 Start=53 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay