3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02661

Details:

PFam ID : PF02661

PFam Domain Description : Fic/DOC family N-terminal

Number of Sequence in 50% Dataset : 332

Number of Sequence in Full Dataset : 2453

Average sequence length: 97.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02661	D8SPZ1_SELML_263_371	97.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02661	D2B2M7_STRRD_94_190	99.8

Sequence based PCA Plot of the family - PF02661 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=30
Motif2 Start=81 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay