3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02660

Details:

PFam ID : PF02660

PFam Domain Description : Glycerol-3-phosphate acyltransferase

Number of Sequence in 50% Dataset : 195

Number of Sequence in Full Dataset : 1099

Average sequence length: 180.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02660	B6W327_9BACE_1_32	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02660	E8KK83_9PAST_10_85	100

Sequence based PCA Plot of the family - PF02660 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=11
Motif2 Start=3 Length=8
Motif3 Start=74 Length=19

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay