3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02657

Details:

PFam ID : PF02657

PFam Domain Description : Fe-S metabolism associated domain

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 604

Average sequence length: 124.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02657	D4D3X9_TRIVH_230_415	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02657	B1ZYM5_OPITP_10_141	100

Sequence based PCA Plot of the family - PF02657 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=19
Motif2 Start=112 Length=8
Motif3 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay