3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02656

Details:

PFam ID : PF02656

PFam Domain Description : Domain of unknown function (DUF202)

Number of Sequence in 50% Dataset : 149

Number of Sequence in Full Dataset : 722

Average sequence length: 76.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02656	D4D3X9_TRIVH_230_415	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02656	C5GQK0_AJEDR_227_346	97.3

Sequence based PCA Plot of the family - PF02656 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=26 Length=8
Motif3 Start=17 Length=8
Motif4 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay