3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02655

Details:

PFam ID : PF02655

PFam Domain Description : ATP-grasp domain

Number of Sequence in 50% Dataset : 113

Number of Sequence in Full Dataset : 199

Average sequence length: 161.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02655	D4D3X9_TRIVH_230_415	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02655	D3E1Z9_METRM_131_327	100

Sequence based PCA Plot of the family - PF02655 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=95 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay