3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02654

Details:

PFam ID : PF02654

PFam Domain Description : Cobalamin-5-phosphate synthase

Number of Sequence in 50% Dataset : 260

Number of Sequence in Full Dataset : 869

Average sequence length: 232.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02654	F0GAT7_9BURK_4_123	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02654	A0LTF2_ACIC1_9_273	100

Sequence based PCA Plot of the family - PF02654 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=85 Length=8
Motif2 Start=32 Length=8
Motif3 Start=241 Length=11
Motif4 Start=4 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay