3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02653 Details: PFam ID : PF02653 PFam Domain Description : Branched-chain amino acid transport system / permease component Number of Sequence in 50% Dataset : 1821 Number of Sequence in Full Dataset : 10633 Average sequence length: 275.8 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF02653F0GAT7_9BURK_4_12393.1 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF02653Q70IJ4_RHIET_1_90100 Sequence based PCA Plot of the family - PF02653 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 3 motifsMotif1 Start=331 Length=8Motif2 Start=296 Length=25Motif3 Start=362 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF02653
PFam Domain Description : Branched-chain amino acid transport system / permease component
Number of Sequence in 50% Dataset : 1821
Number of Sequence in Full Dataset : 10633
Average sequence length: 275.8
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER