Home Browse Search Download Help Group

3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02653
Details:

PFam ID : PF02653

PFam Domain Description : Branched-chain amino acid transport system / permease component

Number of Sequence in 50% Dataset : 1821

Number of Sequence in Full Dataset : 10633

Average sequence length: 275.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF02653F0GAT7_9BURK_4_12393.1
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF02653Q70IJ4_RHIET_1_90100
Sequence based PCA Plot of the family - PF02653 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=331 Length=8
Motif2 Start=296 Length=25
Motif3 Start=362 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay