3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02652

Details:

PFam ID : PF02652

PFam Domain Description : L-lactate permease

Number of Sequence in 50% Dataset : 129

Number of Sequence in Full Dataset : 632

Average sequence length: 459.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02652	Q5F728_NEIG1_41_91	51.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02652	F0G780_9BURK_1_351	100

Sequence based PCA Plot of the family - PF02652 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=72 Length=8
Motif3 Start=39 Length=8
Motif4 Start=63 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay