3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02649

Details:

PFam ID : PF02649

PFam Domain Description : Type I GTP cyclohydrolase folE2

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 369

Average sequence length: 259.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02649	E1NT12_9LACO_1_36	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02649	D3FFH9_CONWI_11_300	100

Sequence based PCA Plot of the family - PF02649 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=148 Length=8
Motif2 Start=46 Length=8
Motif3 Start=135 Length=8
Motif4 Start=235 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay