3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02645

Details:

PFam ID : PF02645

PFam Domain Description : Uncharacterised protein, DegV family COG1307

Number of Sequence in 50% Dataset : 448

Number of Sequence in Full Dataset : 1378

Average sequence length: 206.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02645	E1NT12_9LACO_1_36	89.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02645	A6VAD8_PSEA7_74_314	100

Sequence based PCA Plot of the family - PF02645 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=40 Length=8
Motif2 Start=88 Length=8
Motif3 Start=7 Length=23
Motif4 Start=187 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay