3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02643

Details:

PFam ID : PF02643

PFam Domain Description : Uncharacterized ACR, COG1430

Number of Sequence in 50% Dataset : 108

Number of Sequence in Full Dataset : 567

Average sequence length: 104.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02643	B5K9K8_9RHOB_1_66	81.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02643	B5TTF9_9BACT_33_111	100

Sequence based PCA Plot of the family - PF02643 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=1 Length=17
Motif3 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay