3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02639

Details:

PFam ID : PF02639

PFam Domain Description : Uncharacterized BCR, YaiI/YqxD family COG1671

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 472

Average sequence length: 128.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02639	F0RWF2_SPHGB_18_175	26.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02639	D9QVH2_ACEAZ_16_147	100

Sequence based PCA Plot of the family - PF02639 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=76 Length=8
Motif3 Start=41 Length=8
Motif4 Start=55 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay