3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02638

Details:

PFam ID : PF02638

PFam Domain Description : Uncharacterised BCR, COG1649

Number of Sequence in 50% Dataset : 145

Number of Sequence in Full Dataset : 618

Average sequence length: 319.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02638	A8YEM3_MICAE_198_323	99.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02638	D4JU87_9FIRM_173_363	99.8

Sequence based PCA Plot of the family - PF02638 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=179 Length=14
Motif4 Start=52 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay