3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02637

Details:

PFam ID : PF02637

PFam Domain Description : GatB domain

Number of Sequence in 50% Dataset : 193

Number of Sequence in Full Dataset : 1227

Average sequence length: 146.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02637	E3B7E8_9MICO_56_324	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02637	F0XG35_9PEZI_343_520	100

Sequence based PCA Plot of the family - PF02637 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=68 Length=8
Motif2 Start=161 Length=8
Motif3 Start=151 Length=8
Motif4 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay