3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02635

Details:

PFam ID : PF02635

PFam Domain Description : DsrE/DsrF-like family

Number of Sequence in 50% Dataset : 379

Number of Sequence in Full Dataset : 1406

Average sequence length: 114.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02635	E8KF98_9PAST_1_54	88.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02635	Q8Q004_METMA_5_114	98.2

Sequence based PCA Plot of the family - PF02635 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=13 Length=8
Motif3 Start=41 Length=8
Motif4 Start=70 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay