3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02634

Details:

PFam ID : PF02634

PFam Domain Description : FdhD/NarQ family

Number of Sequence in 50% Dataset : 160

Number of Sequence in Full Dataset : 782

Average sequence length: 224.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02634	D4FP20_STAEP_1_71	84.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02634	Q15RY3_PSEA6_8_287	100

Sequence based PCA Plot of the family - PF02634 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=31 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay