3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02629

Details:

PFam ID : PF02629

PFam Domain Description : CoA binding domain

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 1384

Average sequence length: 96.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02629	Q21YA3_RHOFD_1_94	64.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02629	O29330_ARCFU_223_315	89

Sequence based PCA Plot of the family - PF02629 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=41 Length=8
Motif3 Start=32 Length=8
Motif4 Start=10 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay