3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02627

Details:

PFam ID : PF02627

PFam Domain Description : Carboxymuconolactone decarboxylase family

Number of Sequence in 50% Dataset : 267

Number of Sequence in Full Dataset : 3490

Average sequence length: 82.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02627	A0NSN8_9RHOB_1_41	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02627	D8Q2B7_SCHCM_143_222	99.8

Sequence based PCA Plot of the family - PF02627 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=20 Length=18
Motif2 Start=1 Length=8
Motif3 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay