3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02626

Details:

PFam ID : PF02626

PFam Domain Description : Allophanate hydrolase subunit 2

Number of Sequence in 50% Dataset : 152

Number of Sequence in Full Dataset : 885

Average sequence length: 266.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02626	A0NSN8_9RHOB_1_41	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02626	E0I6I2_9BACL_24_323	100

Sequence based PCA Plot of the family - PF02626 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=66 Length=8
Motif2 Start=23 Length=8
Motif3 Start=50 Length=11
Motif4 Start=88 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay