3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02625

Details:

PFam ID : PF02625

PFam Domain Description : XdhC and CoxI family

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 992

Average sequence length: 69.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02625	A0NSN8_9RHOB_1_41	53.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02625	D5C0X1_NITHN_13_68	99.5

Sequence based PCA Plot of the family - PF02625 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=40 Length=17
Motif2 Start=1 Length=8
Motif3 Start=20 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay