3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02624

Details:

PFam ID : PF02624

PFam Domain Description : YcaO-like family

Number of Sequence in 50% Dataset : 195

Number of Sequence in Full Dataset : 519

Average sequence length: 315.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02624	C3XED9_9HELI_42_132	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02624	Q2J562_FRASC_59_425	100

Sequence based PCA Plot of the family - PF02624 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=270 Length=8
Motif2 Start=82 Length=8
Motif3 Start=98 Length=8
Motif4 Start=286 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay