3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02623

Details:

PFam ID : PF02623

PFam Domain Description : Class II flagellar assembly regulator

Number of Sequence in 50% Dataset : 107

Number of Sequence in Full Dataset : 264

Average sequence length: 119.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02623	C3XED9_9HELI_42_132	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02623	D9SH53_GALCS_21_154	100

Sequence based PCA Plot of the family - PF02623 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=60 Length=8
Motif4 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay