3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02621

Details:

PFam ID : PF02621

PFam Domain Description : Menaquinone biosynthesis

Number of Sequence in 50% Dataset : 105

Number of Sequence in Full Dataset : 449

Average sequence length: 249.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02621	C2G514_9SPHI_2_126	94.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02621	A6GHI7_9DELT_15_287	100

Sequence based PCA Plot of the family - PF02621 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=153 Length=8
Motif2 Start=180 Length=8
Motif3 Start=8 Length=8
Motif4 Start=171 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay