3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02620

Details:

PFam ID : PF02620

PFam Domain Description : Uncharacterized ACR, COG1399

Number of Sequence in 50% Dataset : 314

Number of Sequence in Full Dataset : 1121

Average sequence length: 113.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02620	A9NFP1_ACHLI_51_141	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02620	A6G9T5_9DELT_58_218	100

Sequence based PCA Plot of the family - PF02620 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=30 Length=8
Motif2 Start=55 Length=18
Motif3 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay