3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02618

Details:

PFam ID : PF02618

PFam Domain Description : YceG-like family

Number of Sequence in 50% Dataset : 308

Number of Sequence in Full Dataset : 1231

Average sequence length: 270.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02618	D7G3D3_ECTSI_281_350	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02618	D1PL55_9FIRM_106_435	100

Sequence based PCA Plot of the family - PF02618 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=74 Length=8
Motif2 Start=18 Length=8
Motif3 Start=1 Length=8
Motif4 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay