3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02617

Details:

PFam ID : PF02617

PFam Domain Description : ATP-dependent Clp protease adaptor protein ClpS

Number of Sequence in 50% Dataset : 66

Number of Sequence in Full Dataset : 703

Average sequence length: 78.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02617	D7G3D3_ECTSI_281_350	84.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02617	A6D8M8_9VIBR_22_59	100

Sequence based PCA Plot of the family - PF02617 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=25 Length=8
Motif2 Start=7 Length=17
Motif3 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay