3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02614

Details:

PFam ID : PF02614

PFam Domain Description : Glucuronate isomerase

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 342

Average sequence length: 438.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02614	A9U7U6_PHYPA_1_293	60.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02614	Q39YI0_GEOMG_1_469	100

Sequence based PCA Plot of the family - PF02614 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=177 Length=8
Motif2 Start=231 Length=8
Motif3 Start=26 Length=11
Motif4 Start=377 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay