3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02613

Details:

PFam ID : PF02613

PFam Domain Description : Nitrate reductase delta subunit

Number of Sequence in 50% Dataset : 289

Number of Sequence in Full Dataset : 1005

Average sequence length: 150.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02613	Q5I288_9ENTR_1_70	97.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02613	A3K6T3_9RHOB_68_184	100

Sequence based PCA Plot of the family - PF02613 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=63 Length=8
Motif2 Start=1 Length=21
Motif3 Start=99 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay