3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02611

Details:

PFam ID : PF02611

PFam Domain Description : CDP-diacylglycerol pyrophosphatase

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 90

Average sequence length: 209.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02611	A3Z1X7_9SYNE_13_110	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02611	E8V0N7_TERSS_34_270	100

Sequence based PCA Plot of the family - PF02611 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=2 Length=8
Motif2 Start=226 Length=8
Motif3 Start=73 Length=8
Motif4 Start=108 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay