3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02610

Details:

PFam ID : PF02610

PFam Domain Description : L-arabinose isomerase

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 224

Average sequence length: 341.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02610	A5ZYS9_9FIRM_164_376	21.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02610	E4QDA7_CALH1_51_370	100

Sequence based PCA Plot of the family - PF02610 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=41 Length=14
Motif3 Start=192 Length=11
Motif4 Start=168 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay